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Image Search Results
Journal: Journal of Translational Medicine
Article Title: TREM-1 triggers necroptosis of macrophages through mTOR-dependent mitochondrial fission during acute lung injury
doi: 10.1186/s12967-023-04027-4
Figure Lengend Snippet: Antibody sources and dilutions
Article Snippet:
Techniques: Western Blot, Immunofluorescence, Flow Cytometry, Staining
Journal: Journal of Translational Medicine
Article Title: TREM-1 triggers necroptosis of macrophages through mTOR-dependent mitochondrial fission during acute lung injury
doi: 10.1186/s12967-023-04027-4
Figure Lengend Snippet: mTOR regulates TREM-1-induced mitochondrial fission in macrophages. A – C Protein levels of p-mTOR ser2448 and p-4E-BP1 S65 , n = 3. D - E , mitochondrial morphology was stained with TOM20 (green) and the morphological skeleton. F , quantification of mitochondrial morphology, n = 3. G , H Mitochondrial fission-related proteins: TOM20, DRP1 Ser616 , MTFP1, and PGAM5 proteins, n = 3. G , H Mitophagy-related proteins: Pink1 and Beclin1, n = 3
Article Snippet:
Techniques: Staining
Journal: Autophagy
Article Title: Mass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy
doi: 10.1080/15548627.2020.1719746
Figure Lengend Snippet: CALCOCO1 is regulated by MTOR and autophagy. (A) Protein immunoblot analyses with antibodies as shown, in WT and atg5–/– MEFs, in glucose– or galactose-containing media. MEFs were treated with vehicle (Veh) or 100 nM MLN0128 (MLN) for ~17 h. The ratio of CALCOCO1:ACTB is shown. (B) Immunoblot analyses of HEK293 cells treated for 24 h with Veh, 100 nM MLN, and 100 µM chloroquine (CQ) as labeled. The ratio of CALCOCO1:ACTB is shown. (C) Immunoblot analyses of MB231 cells treated for 24 h with Veh, 100 nM MLN, and 50 nM bafilomycin A1 (Baf) as labeled. The ratio of CALCOCO1:ACTB is shown. (D) Immunoblot analyses of WT, sgATG7 KO, and sgATG3 KO Hep3B cells, treated for 24 h with Veh or 100 nM MLN0128. The ratio of CALCOCO1:ACTB is shown. (E) Images of MB231 cells. Top: Immunofluorescent images of CALCOCO1-MYCDDK using anti-MYC (9E10) antibody and DAPI . Bottom: Images of GFP-CALCOCO1. Single-color maximum projection images are shown on the left. Dual-color orthogonal views from Z-stack images are shown on the right. Scale bar: 10 µm. (F) Immunoblot analyses of cytoplasmic and nuclear fractions from HEK293, MB231, and MCF7 cells treated for 24 h with Veh or 100 nM MLN
Article Snippet: Antibodies Primary antibodies used in this study include: Abcam antibodies for CALCOCO1/CoCoA (ab70564); ABD SeroTech antibodies GAPDH (HCA272); BD Biosciences antibodies for SQSTM1 (610832) and RPS6KB1 (611261); Cell Signaling Technology antibodies for ATG3 (3415), ATG5 (8540), ATG7 (8558), MAP1LC3A/B (12741), MAP1LC3C (14723), ULK1 (6439 and 8054), p-EIF4EBP1 T37/46 (2855), p-EIF4EBP1 S65 (9456), EIF4EBP1 (9644) p-AKT1 S473 (4060), AKT1 (9272) p-RPS6KB T389 (9234), p-ACACA S79 (11818), ACACA (3662) DYKDDDDK-tag (14793),
Techniques: Western Blot, Labeling
Journal: Autophagy
Article Title: Mass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy
doi: 10.1080/15548627.2020.1719746
Figure Lengend Snippet: CALCOCO1 interacts with MAP1LC3C and other LC3/GABARAP family members. (A) Cartoon of domains and motifs found in human and mouse CALCOCO family members. (B) Immunoprecipitation (IP) analyses of CALCOCO1-MYCDDK and HA-tagged MAP1LC3/GABARAP orthologs in HEK293 cells. HA-tagged protein complexes were immunoprecipitated with anti-HA antibody, resolved by SDS-PAGE, and probed with anti-HA or anti-DDK antibody. Expressions of tagged proteins and ACTB in cell lysates are shown with antibodies as described. (C) IP analyses of CALCOCO1-MYCDDK and HA-tagged MAP1LC3/GABARAP orthologs expressed in HEK293 cells that were treated overnight with chloroquine (CQ) to inhibit lysosomal flux. HA-tagged protein complexes were IP’d with anti-HA antibody and probed with anti-DDK or mixed antibodies against HA, MAP1LC3A/B, and MAP1LC3C. Expressions of tagged proteins and ACTB in cell lysates are shown with antibodies as described. (D) IP analyses of HA-MAP1LC3C or HA-GFP co-expressed with wild type (WT) CALCOCO1-MYCDDK, CLIR mutants L140A and V142A, and LIR mutant W47A in HEK293 cells. CALCOCO1W47A was transfected at 2 different concentrations to match WT expression levels. HA-tagged protein complexes were immunoprecipitated with anti-HA antibody, and probed with anti-HA or anti-CALCOCO1 antibody. Expressions of tagged proteins and ACTB in cell lysates are shown with antibodies as noted. (E) IP analyses of CALCOCO1-MYCDDK with endogenous MAP1LC3B. WT CALCOCO1-MYCDDK, 2 concentrations of the CALCOCO1W47A, and GFP-DDK (control) were expressed in HEK293 cells, then treated for 18 h with 100 nM MLN0128 and 100 uM CQ. CALCOCO1-MYCDDK complexes were immunoprecipitated with anti-Flag® M2 affinity gel (MilliporeSigma, A2220) and probed with anti-DDK or MAP1LC3B antibodies. Expressions of CALCOCO1-MYCDDK, GFP-DDK, ACTB and MAP1LC3B in cell lysates are shown with antibodies as noted. (F) IP analyses of HA-MAP1LC3C or HA-GFP co-expressed with WT CALCOCO1-MYCDDK, CLIR mutants (L140A and V142A), and R12H mutant in HEK293 cells. HA-tagged protein complexes were immunoprecipitated with anti-HA antibody and probed with anti-HA or anti-CALCOCO1 antibody. Expressions of tagged proteins and ACTB in cell lysates are shown with antibodies, as noted
Article Snippet: Antibodies Primary antibodies used in this study include: Abcam antibodies for CALCOCO1/CoCoA (ab70564); ABD SeroTech antibodies GAPDH (HCA272); BD Biosciences antibodies for SQSTM1 (610832) and RPS6KB1 (611261);
Techniques: Immunoprecipitation, SDS Page, Mutagenesis, Transfection, Expressing